Scatter plot of two or three genes
for Vivian proteome
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Select a cell set:
all 66 profiles
Normalization?
log2LFQ
Scale?
Linear
log(value+1)
Jitter?
Yes
No
Calculate Corr?
(could be slow)
Yes
No
Color codes?
By compartments: NP, NP-IAF, IAF, OAF (K=4)
By age: young and old (K=2)
By age+compartments: NP, NP-IAF, IAF, OAF (K=4*2)
By directions: L/R/A/P/C (K=5)
By levels: L34, L45, L5S1 (K=3 clusters)
Dot shape scheme?
young in circles, age triangles
all circles
Point size scale? (
2
)
Point size for zero values? (
3
)
Gene 1:
-or-
select a cell property
Gene 2:
-or-
select a cell property
Gene 3:
-or-
select a cell property
What quantity to represent dot size?
-- nothing, same size for all cells --
# of all genes, per cell
# of protein coding genes expressed, per cell
# of processed_pseudogene expressed, per cell
# of lincRNAs genes expressed, per cell
Total # of UMI per cell
eGFP levels
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