Information for 1-AATCACTTTC (Motif 2)

T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
Reverse Opposite:
T A C G C T G A C T G A C T G A A T C G G A C T T A C G G T C A A G C T A C G T
p-value:1e-6
log p-value:-1.576e+01
Information Content per bp:1.730
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif52.63%
Number of Background Sequences with motif1613.6
Percentage of Background Sequences with motif6.97%
Average Position of motif in Targets216.9 +/- 157.6bp
Average Position of motif in Background226.0 +/- 151.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AATCACTTTC
TAATCAATTA-
 A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AATCACTTTC-------
--TCACTTTCACTTTCN
 T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATCACTTTC
ACTTTCACTTTC
 A C G T A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATCACTTTC
CAAATCACTG--
 A C G T A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATCACTTTC
AGTTTCAGTTTC
 A C G T A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AATCACTTTC------
----ACTTTCACTTTC
 T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

PAX3/MA0780.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATCACTTTC
TAATCGATTA-
 A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATCACTTTC
AAGCACTTAA
 T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATCACTTTC
HNRAATCAAT---
 A C G T A C G T A C G T T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AATCACTTTC---
---TGGTTTCAGT
 T G C A T C G A C A G T A G T C C G T A T A G C A G C T A G C T A G C T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T