Information for 4-CTGTCTCT (Motif 6)

A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G C G T A A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.078e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif31.58%
Number of Background Sequences with motif740.3
Percentage of Background Sequences with motif3.20%
Average Position of motif in Targets171.7 +/- 121.4bp
Average Position of motif in Background227.2 +/- 140.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCT---
ACTTTCACTTTC
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCT--
GSCTGTCACTCA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCT
GCTGTG---
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCT---
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGTCTCT
CTGTCTGG
 A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CTGTCTCT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCT
CCTGTCAA-
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCTCT----
TCACTTTCACTTTCN
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCT
GCTGTCAA-
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCTCT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C